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Toxicology and Environmental Science

Toxicology and environmental science research requires high-precision imaging, high-throughput analysis, and advanced molecular assessments to evaluate the impact of toxins, chemicals, and environmental pollutants on biological systems. Traditional microscopy and histopathology methods often struggle with reproducibility, scalability, and in-depth molecular analysis, limiting researchers’ ability to draw accurate conclusions.

To address these challenges, 3DHISTECH’s digital pathology solutions, including high-performance digital pathology scanners, TMA technology, and AI-powered software, provide scalable, high-resolution, and automated workflows to enhance toxicology research, improve efficiency, and accelerate discovery.

Key Challenges in Toxicology and Environmental Science Research

Toxicology research often involves large-scale screening of tissue samples affected by environmental toxins. Traditional microscopy is time-consuming and inconsistent due to manual handling errors.

Assessing toxic effects at the molecular level requires high-resolution imaging and fluorescence detection, which conventional histology cannot achieve efficiently.

Standard brightfield imaging is not always sufficient to analyze subcellular changes, and toxicity-induced morphological alterations in tissues can be subtle.

Toxicological studies often involve long-term tracking of thousands of samples, requiring automated data handling and AI-driven analysis tools.

Toxicity often affects tissue structure in three dimensions; however, traditional sectioning and imaging methods cannot reconstruct 3D tissue morphology accurately.

Optimizing Toxicology and Environmental Science

Solutions

№1. High-Performance Digital Pathology for Toxicology Research

Research

Pannoramic Confocal Digital Scanner

The Pannoramic Confocal Digital Scanner combines confocal microscopy and digital pathology to deliver high-resolution, fluorescence, and 3D imaging for advanced research applications. Engineered for molecular pathology, neuroscience, cancer research, and biomarker discovery, it offers unprecedented image quality with minimal photobleaching and high-speed scanning, ensuring efficient, high-throughput analysis for research laboratories.

Key Features

  • 3D Confocal Z-Stack Imaging eliminates out-of-focus blur, providing in-depth morphology studies of toxicity effects.
  • High-speed fluorescence and brightfield scanning ensure detailed biomarker analysis.
Research

Pannoramic 250 FLASH III Digital Scanner

Developed for research innovation, this 300-slide scanner delivers rapid brightfield imaging, advanced fluorescence capabilities with 45 channels, AI-driven tissue detection, and Z-stack options, transforming demanding workflows with meticulous attention to detail.
Pannoramic 250 FLASH III

Key Features

  • 300-slide capacity with AI-powered tissue detection optimizes large-scale toxicology screenings.
  • Supports up to 45 fluorescent channels, ideal for multiplex biomarker detection in toxicology assays.
Research

Pannoramic MIDI III Digital Scanner

The Pannoramic MIDI III is a versatile high-performance digital slide scanner designed for advanced pathology research. With 12-slide capacity, high-speed brightfield and fluorescent scanning, and exceptional resolution down to 0.10 um/pixel, it offers unmatched precision. Its compact design and automated workflows make it ideal for research applications, including biomarker analysis, multiplex imaging, and tissue morphology studies.
PANNORAMIC™ MIDI III

Key Features

  • Dual brightfield and fluorescence scanning with a 12-slide capacity, ensuring efficient toxicology biomarker analysis.
  • Automated workflows improve reproducibility and speed.
Research

Pannoramic 1000 Digital Scanner

Discover the Pannoramic 1000, the ultimate digital pathology scanner designed for large-scale laboratories, offering unparalleled speed, capacity, and image quality for seamless research excellence and effortless integration into existing workflows and eco-systems.

Key Features

  • High-throughput scanning (1200 slides) ensures scalability for large toxicology studies.
  • Z-stack and water immersion options allow for detailed cellular imaging in toxicity assessments.

№2. Tissue Microarray (TMA) for High-Throughput Toxicological Screening

Research

TMA molmed

Discover the TMA molmed, a fully automated, high-speed solution for tissue microarray creation and molecular sampling from FFPE and mega blocks. Combing precision microarraying with laser microdissection-like functionality, it enables highly accurate tissue extraction for advanced molecular applications, making it an essential tool for pathology, biobanking, and traslational research.
tma molmed

Key Features

  • Automated tissue microarray creation supports batch analysis of toxicity effects on multiple samples.
  • Direct molecular sampling allows researchers to extract DNA/RNA/proteins for further toxicological validation.
  • High-density TMAs (up to 558 cores per recipient block) enable parallel analysis of multiple samples exposed to toxins.

№3. Advanced 3D Imaging for Structural Toxicology and Organ Analysis

Research

Pannoramic-X

The Pannoramic-X micro-CT scanner, with its CT Control software and DVREAL 3D Imaging, enables high-resolution imaging of whole-FFPE, Full Blocks, and specimens up to 15 cm. Utilizing advanced soft X-ray technology, it supports virtual slicing, virtual staining, and biomarker quantification, transforming cancer research, molecular pathology, and digital histopathology workflows.
Pannoramic X MicroCT

Key Features

  • 3D virtual slicing & staining allows toxicity assessments without physical sectioning, preserving sample integrity.
  • Biomarker quantification & volumetric analysis enable detailed organ-level toxicology studies.
  • High-throughput scanning for full FFPE blocks or macro-blocks (up to 15 cm) enables large-scale toxicology research.

№4. AI-Powered Software for Data Analysis and Workflow Optimization

Software Solutions

QuantCenter

AI-driven image analysis

PatternQuant

Detecting toxicity-induced tissue damage

HistoQuant

Quantitative biomarker assessments in toxicology research

SlideManager

Centralized toxicology project management and automated image analysis

Slide-, Web- & iPadViewer

Remote toxicology data review and multi-user collaboration

SlideCenter & SlideMaster

Scalable, secure data handling for high-throughput toxicology research

Recent Case Study

Toxicology Study on Industrial Pollutants

Research Institution

National Environmental Toxicology Center

Objective

To assess the effects of industrial pollutants on liver tissue samples from animal models and human biopsy specimens.

Implementation

  1. Pannoramic 1000 Digital Scanner was used to scan 500+ liver tissue samples at 40x resolution for toxicology assessment.
  2. TMA molmed was employed to create high-density TMAs from affected tissues to enable batch biomarker analysis.
  3. Pannoramic-X Micro-CT provided 3D virtual staining and biomarker analysis, allowing researchers to study tissue damage without destructive sectioning.
  4. QuantCenter AI-powered analysis detected tissue fibrosis, inflammation, and necrosis levels, correlating pollutant exposure with histopathological alterations.

Results & Impact

  • Improved Toxicity Assessment – Researchers achieved faster, more accurate analysis of pollutant-induced tissue damage.
  • Higher Throughput & Reproducibility – Scanning and AI-based analysis reduced errors and increased efficiency by 60% compared to manual microscopy.
  • Cost Savings & Scalability – Digital pathology reduced the need for physical slide storage and repeated analysis, saving 30% in lab costs.
  • 3D Analysis Enhanced Understanding – Pannoramic-X’s 3D visualization enabled more detailed toxicology assessments than traditional histology.

The combination of 3DHISTECH’s digital pathology scanners, TMA solutions, 3D imaging technology, and AI-powered analysis software provides a game-changing approach to toxicology and environmental science research.

These solutions address key challenges such as throughput, accuracy, and scalability by enabling high-throughput toxicology screening, automated biomarker quantification, and AI-driven analysis. With the ability to handle thousands of toxicology samples with precision and efficiency, researchers, pharmaceutical companies, and regulatory bodies can make data-driven decisions faster, with higher confidence and reproducibility.

By integrating digital pathology solutions, toxicology and environmental science can move toward more precise, scalable, and efficient research workflows, accelerating discoveries in toxin exposure, drug safety, and environmental impact studies.

Who Benefits from These Solutions?

Faster, high-resolution analysis of toxic effects in tissues, automated AI-driven quantification.

Better assessment of pollutants’ impact on biological samples, high-throughput screening.

Reliable preclinical drug toxicity testing, improved biomarker quantification.

Standardized, reproducible digital pathology data for environmental risk assessments.

Scalable toxicology workflows with remote collaboration tools and AI-driven data handling.

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