Vesterinen T., Salmenkivi K., Mustonen H., Kuopio T., Lappi-Blanco E., Paavonen T., Vainio P., Knuuttila A., Carpén O., Haglund C., Arola J. (2019) Performance of Finnish biobanks in nationwide pulmonary carcinoid tumour research Virchows Archive

Valcz G., Buzás E.I., Kittel Á.,Krenács T., Visnovitz T., Spisák S., Török Gy., Homolya L., Zsigrai S., Kiszler G., Antalffy G., Pálóczi K., Szállási Z., Szabó V., Sebestyén A., Solymosi N., Kalmár A., Dede K., Lőrincz P., Tulassay Zs., Igaz P., Molnár B. (2019) En bloc release of MVB-like small extracellular vesicle clusters by colorectal carcinoma cells Journal of Extracellular Vesicles

Carpenco E., Ceaşu R. A., Cimpean A.M., Gaje P.N., Șaptefraţi L., Fulga V., David V., Raica M. (2019) Mast Cells as an Indicator and Prognostic Marker in Molecular Subtypes of Breast Cancer In Vivo

Hötzel K. J., Havnar C. A., Ngu H. V., Rost S., Liu S. D., Rangell L. K., Peale F. V. (2019) Synthetic Antigen Gels as Practical Controls for Standardized and Quantitative Immunohistochemistry Journal of Histochemistry & Cytochemistry

Pawelczyk K., Piotrowska A., Ciesielska U., Jablonska K., Glatzel-Plucinska N., Grzegrzolka J., Podhorska-Okolow M., Dziegiel P., and Nowinska K. (2019) Role of PD-L1 Expression in Non-Small Cell Lung Cancer and Their Prognostic Significance according to Clinicopathological Factors and Diagnostic Markers International Journal of Molecular Sciences

Haller F., Bieg M., Will R., Körner C., Weichenhan D., Bott A., Ishaque N., Lutsik P., Moskalev E.A., Mueller S.K., Bähr M., Woerner A., Kaiser B., Scherl C., Haderlein M., Kleinheinz K., Fietkau R., Iro H., Eils R., Hartmann A., Plass C., Wiemann S., Agaimy A. (2019) Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands Nature Communications volume 10, Article number: 368 

Kneppers J., Krijgsman O., Melis M., de Jong J., Peeper D. S., Bekers E., van der Poel H.G., Zwart W. Bergman A.M. (2019) Frequent clonal relations between metastases and non-index prostate cancer lesions


Acs B., Pelekanou V., Bai Y., Martinez-Morilla S., Toki M., Leung SCY., Nielsen TO., Rimm DL. (2018) Ki67 reproducibility using digital image analysis: an inter-platform and inter-operator study.

Helin H., Tolonen T., Ylinen O., Tolonen P., Näpänkangas J., Isola J. (2018)  Optimized JPEG 2000 Compression for Efficient Storage of Histopathological Whole-Slide Images.

Yang L., Jiawei Y., Cao S., Guo L., Sirui L., Luwei Z., Cuixia D., Lu G., Yupei W., Rong Z., Jing S., Hong Z. (2018).  Ameliorating mitochondrial dysfunction restores carbon ion-induced cognitive deficits via co-activation of NRF2 and PINK1 signaling pathway

Laedrach, C., Salhia, B., Cihoric, N., Zlobec,I., Tapia, C. (2018). Immunophenotypic profile of tumor buds in breast cancer. Pathol. Res. Pract. [Epub ahead of print]

Glatzel-Plucinska, N., Piotrowska, A., Grzegrzolka, J., Olbromski, M., Rzechonek, A., Dziegiel, P., and Podhorska-Okolow, M. (2018). SATB1 Level Correlates with Ki-67 Expression and Is a Positive Prognostic Factor in Non-small Cell Lung Carcinoma. Anticancer Res. 38, 723–736.

Visser , N.C.M., Wurff, A.A.M. van der, Pijnenborg, J.M.A., Massuger, L.F.A.G., Bulten, J., and Nagtegaal, I.D. (2018). Tissue microarray is suitable for scientific biomarkers studies in endometrial cancer. Virchows Arch. 1–7.

Hadgu, E., Seifu, D., Tigneh, W., Bokretsion, Y., Bekele, A., Abebe, M., Sollie, T., Merajver, S.D., Karlsson, C., and Karlsson, M.G. (2018). Breast cancer in Ethiopia: evidence for geographic difference in the distribution of molecular subtypes in Africa. BMC Womens Health 18, 40.

Zadka, Ł., Kulus, M.J., Kurnol, K., Piotrowska, A., Glatzel-Plucińska, N., Jurek, T., Czuba, M., Nowak, A., Chabowski, M., Janczak, D., et al. (2018). The expression of IL10RA in colorectal cancer and its correlation with the proliferation index and the clinical stage of the disease. Cytokine 110, 116–125.

Kobierzycki, C., Grzegrzolka, J., Glatzel-Plucinska, N., Piotrowska, A., Wojnar, A., Smolarz, B., Romanowicz, H., and Dziegiel, P. (2018). Expression of p16 and SATB1 in Invasive Ductal Breast Cancer – A Preliminary Study. In Vivo 32, 731–736. 

Błochowiak, K., Sokalski, J., Golusińska, E., Trzybulska, D., Witmanowski, H., Bodnar, M., and Marszałek, A. (2018). Salivary levels and immunohistochemical expression of selected angiogenic factors in benign and malignant parotid gland tumours. Clin Oral Invest 1–12.

Brantley, K.D., Kjærsgaard, A., Cronin-Fenton, D., Yacoub, R., Nielsen, A.S., Lauridsen, K.L., Hamilton-Dutoit, S., and Lash, T.L. (2018). Stanniocalcin Expression as a Predictor of Late Breast Cancer Recurrence. Cancer Epidemiol Biomarkers Prev.

Chauvin, A., Wang, C.-S., Geha, S., Garde-Granger, P., Mathieu, A.-A., Lacasse, V., and Boisvert, F.-M. (2018). The response to neoadjuvant chemoradiotherapy with 5-fluorouracil in locally advanced rectal cancer patients: a predictive proteomic signature. Clinical Proteomics 15, 16.

Toth, L., Nagy, B., Mehes, G., Laszlo, E., Molnar, P.P., Poka, R., and Hernadi, Z. (2018). Cell adhesion molecule profiles, proliferation activity and p53 expression in advanced epithelial ovarian cancer induced malignant ascites—Correlation of tissue microarray and cytology microarray. Pathology - Research and Practice 214, 978–985.

Birkman, E.-M., Mansuri, N., Kurki, S., Ålgars, A., Lintunen, M., Ristamäki, R., Sundström, J., and Carpén, O. (2018). Gastric cancer: immunohistochemical classification of molecular subtypes and their association with clinicopathological characteristics. Virchows Arch. 472, 369–382.

Conemans, E.B., Raicu-Ionita, G.M., Pieterman, C.R.C., Dreijerink, K.M.A., Dekkers, O.M., Hermus, A.R., Herder, W.W. de, Drent, M.L., Horst-Schrivers, A.N.A. van der, Havekes, B., et al. (2018). Expression of p27Kip1 and p18Ink4c in human multiple endocrine neoplasia type 1-related pancreatic neuroendocrine tumors. J Endocrinol Invest 41, 655–661.

David, S.N., Egloff, S.A.A., Goyal, R., Clark, P.E., Phillips, S., Gellert, L.L., Hameed, O., and Giannico, G.A. (2018). MAGI2 is an independent predictor of biochemical recurrence in prostate cancer. The Prostate 78, 616–622.

Depciuch, J., Stanek-Widera, A., Lange, D., Biskup-Frużyńska, M., Stanek-Tarkowska, J., Czarny, W., and Cebulski, J. (2018). Spectroscopic analysis of normal and neoplastic (WI-FTC) thyroid tissue. Spectrochim Acta A Mol Biomol Spectrosc 204, 18–24.

El Ansari, R., Craze, M.L., Miligy, I., Diez-Rodriguez, M., Nolan, C.C., Ellis, I.O., Rakha, E.A., and Green, A.R. (2018). The amino acid transporter SLC7A5 confers a poor prognosis in the highly proliferative breast cancer subtypes and is a key therapeutic target in luminal B tumours. Breast Cancer Research 20, 21.

Guleria, P., Husain, N., Shukla, S., Kumar, S., Parshad, R., and Jain, D. (2018). PD-L1 immuno-expression assay in thymomas: Study of 84 cases and review of literature. Ann Diagn Pathol 34, 135–141.

Laedrach, C., Salhia, B., Cihoric, N., Zlobec,I., Tapia, C. (2018). Immunophenotypic profile of tumor buds in breast cancer. Pathol. Res. Pract. [Epub ahead of print]

Morin, E., Sjöberg, E., Tjomsland, V., Testini, C., Lindskog, C., Franklin, O., Sund, M., Öhlund, D., Kiflemariam, S., Sjöblom, T., et al.  (2018) VEGF receptor-2/neuropilin1 trans-complex formation between endothelial and tumor cells is an independent predictor of pancreatic cancer survival. The Journal of Pathology 0.

Neyaz, A., Husain, N., Gupta, S., Kumari, S., Arora, A., Awasthi, N.P., Malhotra, K.P., and Misra, S. (2018). Investigation of targetable predictive and prognostic markers in gallbladder carcinoma. J Gastrointest Oncol 9, 111–125.

Neyaz, A., Husain, N., Kumari, S., Gupta, S., Shukla, S., Arshad, S., Anand, N., and Chaturvedi, A. (2018) Clinical relevance of PD-L1 expression in gallbladder cancer: a potential target for therapy. Histopathology 0.

Ooft, M.L., Ipenburg, J. van, Loo, R.J.M. van de, Jong, R. de, Moelans, C.B., Bree, R. de, Herdt, M.J. de, Koljenović, S., Jong, R.B. de, Hardillo, J., et al. (2018) Differences in cancer gene copy number alterations between Epstein-Barr virus-positive and Epstein-Barr virus-negative nasopharyngeal carcinoma. Head & Neck 0.

Pokataev, I., Kudaibergenova, A., Artemyeva, A., Popova, A., Rumyantsev, A., Podluzhny, D., Kudashkin, N., Fedyanin, M., Tryakin, A., and Tjulandin, S. (2018). Intratumoral Heterogeneity of SMAD4 Immunohistochemical Expression and Its Role in Prediction of Recurrence Pattern in Patients with Resectable Pancreatic Cancer. J Gastrointest Canc 1–7.

Suster, D., Pihan, G., Mackinnon, A.C., and Suster, S. (2018). Expression of PD-L1/PD-1 in lymphoepithelioma-like carcinoma of the thymus. Modern Pathology 1.Vesterinen,

T., Mononen, S., Salmenkivi, K., Mustonen, H., Ilonen, I., Knuuttila, A., Haglund, C., and Arola, J. (2018). Clinicopathological indicators of survival among patients with pulmonary carcinoid tumor. Acta Oncologica 57, 1109–1116.

Wartenberg, M., Cibin, S., Zlobec, I., Vassella, E., Eppenberger-Castori, S., Terracciano, L., Eichmann, M.D., Worni, M., Gloor, B., Perren, A., et al. (2018). Integrated Genomic and Immunophenotypic Classification of Pancreatic Cancer Reveals Three Distinct Subtypes with Prognostic/Predictive Significance.Clin Cancer Res.

Graule, J., Uth, K., Fischer, E., Centeno, I., Galván, J.A., Eichmann, M., Rau, T.T., Langer, R., Dawson, H., Nitsche, U., et al. (2018). CDX2 in colorectal cancer is an independent prognostic factor and regulated by promoter methylation and histone deacetylation in tumors of the serrated pathway. Clin. Epigenetics 10, 120.


Tanggang, B., Guobei Y., Xin S., Lin X., Yu Z., Jianglin L., Xiaoxiao H., Zhen L., Jun H., Yibin Z., Hui Z., Yang S., Peifu F., Dong W., Bin H., Jing L., Weihong T., Mao Y. (2017). Deubiquitylation and stabilization of p21 by USP11 is critical for cell-cycle progression and DNA damage responses

Ying L., Xiaoxiao H., Linlin W., Xiangjun L., Tao B., Weihong T., Dihua S. (2017.) Quinacridone derivative as a new photosensitizer: Photodynamic effects in cells and in vivo

Bengtsson E, Danielsen H, Treanor D, Gurcan MN, MacAulay C, Molnár B.  (2017): Computer-aided diagnostics in digital pathology.

CYTOMETRY A Jun;91(6):551-554.

Paulik R, Micsik T, Kiszler G, Kaszál P, Székely J, Paulik N, Várhalmi E, Prémusz V, Krenács T, Molnár B, (2017): An optimized image analysis algorithm for detecting nuclear signals in digital whole slides for histopathology.
CYTOMETRY PART A 91:(6) pp. 596-608.

Nolte, S., Zlobec, I., Lugli, A., Hohenberger, W., Croner, R., Merkel, S., Hartmann, A., Geppert, C.I., and Rau, T.T. (2017). Construction and analysis of tissue microarrays in the era of digital pathology: a pilot study targeting CDX1 and CDX2 in a colon cancer cohort of 612 patients. J. Pathol. Clin. Res. 3, 58–70.

Giovannetti, E., Zucali, P.A., Assaraf, Y.G., Funel, N., Gemelli, M., Stark, M., Thunnissen, E., Hou, Z., Muller, I.B., Struijs, E.A., et al. (2017). Role of proton-coupled folate transporter in pemetrexed-resistance of mesothelioma: clinical evidence and new pharmacological tools. Ann. Oncol.

Rau, K.-M., Su, Y.-L., Li, S.-H., Hsieh, M.-C., Wu, S.-C., Chou, F.-F., Chiu, T.-J., Chen, Y.-H., and Liu, C.-T. (2017). High expression of endoglin in primary breast cancer may predict response to neoadjuvant chemotherapy. Mol. Med. Rep. 16, 7185–7190.

Lin, F. (2017). Immunohistochemistry Quality Management Program Using Cultured Cell Lines for Tissue Microarray (TMA) Blocks. 

Fu, X., Lennerz, J. K.,, Onozato, M., Iafrate, A., Yagi, Y. (2017). Evaluation of a confocal WSI scanner for FISH slide imaging and image analysis. Diagnostic Pathology 2017, 3: 249.

Loibner, M., Oberauner-Wappis, L., Viertler, C., Groelz, D., and Zatloukal, K. (2017). Protocol for HER2 FISH Using a Non-cross-linking, Formalin-free Tissue Fixative to Combine Advantages of Cryo-preservation and Formalin Fixation. J Vis Exp. 2017; (130): 55885.

Scheel, A.H., Baenfer, G., Baretton, G., Dietel, M., Diezko, R., Henkel, T., Heukamp, L.C., Jasani, B., Jöhrens, K., Kirchner, T., et al. (2017). Interlaboratory concordance of PD-L1 immunohistochemistry for non-small-cell lung cancer. Histopathology 72, 449–459.


Leenen, L. P. H., & Blokhuis, T. J. (2016). Neutrophils contribute to fracture healing by synthesizing fibronectin+ extracellular matrix rapidly after injury. Clinical Immunology, 164, 78–84. 

Koole, K., Clausen, M.J.A.M., Es, R.J.J., Kempen, P.M.W., Melchers, L.J., Koole, R., Langendijk, J.A., Diest, P.J., Roodenburg, J.L.N., Schuuring, E., et al. (2016). FGFR Family Members Protein Expression as Prognostic Markers in Oral Cavity and Oropharyngeal Squamous Cell Carcinoma. Mol. Diagn. Ther. 1–12.

Green, W.J., Ball, G., Hulman, G., Johnson, C., Van Schalwyk, G., Ratan, H.L., Soria, D., Garibaldi, J.M., Parkinson, R., Hulman, J., et al. (2016). KI67 and DLX2 predict increased risk of metastasis formation in prostate cancer–a targeted molecular approach. Br. J. Cancer.

Koole, K., Peeters, T., van Hengel, O.R.J., Brinkhuis, A., van Es, R.J.J., and Willems, S.M. (2016). RET protein is overexpressed in oral squamous cell carcinoma. Histopathology doi: 10.1111/his.13023.

Butz, H., Németh, K., Czenke, D., Likó, I., Czirják, S., Zivkovic, V., Baghy, K., Korbonits, M., Kovalszky, I., Igaz, P., et al. (2016). Systematic Investigation of Expression of G2/M Transition Genes Reveals CDC25 Alteration in Nonfunctioning Pituitary Adenomas.
Pathol. Oncol. Res. 1–9.

Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., Boeckx, B., Wijnhoven, P.W.G., Radaelli, E., Vermi, W., et al. (2016). p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat. Med. 22, 861–868.



Goos, J.A.C.M., de Cuba, E.M.V., Coupé, V.M.H., Diosdado, B., Delis-Van Diemen, P.M., Karga, C., Beliën, J.A.M., Menke-Van der Houven van Oordt, C.W., Geldof, A.A., Meijer, G.A., et al. (2015).
Glucose Transporter 1 (SLC2A1) and Vascular Endothelial Growth Factor A (VEGFA) Predict Survival After Resection of Colorectal Cancer Liver Metastasis:
Ann. Surg. 1.

Aleskandarany, M.,  Caracappa, D.,  Nolan, C., C.,  Macmillan, D.,  R.,  Ellis, I., O., Rakha. E., A., and  Green, A., E. (2015).
DNA damage response markers are differentially expressed in BRCA-mutated breast cancers.
Breast Cancer Research and Treatment. 10.1007/s10549-015-3306-6

Dale, Oliver T., Tamara Aleksic, Ketan A. Shah, Cheng Han, Hisham Mehanna, Davy C. M. Rapozo, Jon D. H. Shear. (2015).
IGF-1R Expression Is Associated with HPV Negative Status and Adverse Survival in Head and Neck Squamous Cell Cancer.
Carcinogenesis. bgv053. doi:10.1093/carcin/bgv053.

Lacombe, A., Carafa, V., Schneider, S., Sticker-Jantscheff, M., Tornillo, L., and Eppenberger-Castori, S. (2015).
Re-Punching Tissue Microarrays Is Possible: Why Can This Be Useful and How to Do It.
Microarrays 4, 245–254.

Vassella, E., Galván, J.A., and Zlobec, I. (2015).
Tissue Microarray Technology for Molecular Applications: Investigation of Cross-Contamination between Tissue Samples Obtained from the Same Punching Device.
Microarrays 4, 188–195.

Lindskog, C., Linné, J., Fagerberg, L., Hallström, B.M., Sundberg, C.J., Lindholm, M., Huss, M., Kampf, C., Choi, H., Liem, D.A., et al. (2015).
The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling.
BMC Genomics 16, 475.



Mitsuyoshi Honjo, MD, Fuminori Moriyasu, MD, PhD, Katsutoshi Sugimoto, MD, PhD, Hisashi Oshiro, MD, PhD, Kentaro Sakamaki, PhD, Kazuhiko Kasuya, MD, PhD, Takeshi Nagai, MD, Akihiko Tsuchida, MD, PhD and Yasuharu Imai, MD, PhD
Relationship Between the Liver Tissue Shear Modulus and Histopathologic Findings Analyzed by Intraoperative Shear Wave Elastography and Digital Microscopically Assisted Morphometry in Patients With Hepatocellular Carcinoma
JUM January 2014 33:61-71

Chang, H., Peluso, D., Hussain, S., Shipitsin, M., and Blume-Jensen, P. (2014).
Optimizing tissue microarray construction procedure to improve quality of sections.
J. Histotechnol. 37, 95–100.

Hajnalka Rajnai, Ivett Teleki, Gergo Kiszner, Nora Meggyesházi, Peter Balla, Tamas Vancsik, Györgyi Műzes,Judit Csomor, András Matolcsy, and Tibor Krenács (2014).
Connexin 43 communication channels in follicular dendritic cell development and in follicular lymphomas.
J. of Immunology Res. In Press

Zlobec, I., Suter, G., Perren, A., and Lugli, A. (2014).
A Next-generation Tissue Microarray (ngTMA) Protocol for Biomarker Studies.
J. Vis. Exp. 91.



Stelkovics E, Kiszner G, Meggyeshazi N, Korom I, Varga E, Nemeth I, Molnar J, Marczinovits I, Krenacs T. (2013): Selective in situ protein expression profiles correlate with distinct phenotypes of basal cell carcinoma and squamous cell carcinoma of the skin
Histol Histopathol (2013) 28: 941-954

van Oosterwijk JG, Meijer D, van Ruler MA, van den Akker BE, Oosting J, Krenács T, Picci P, Flanagan AM, Liegl-Atzwanger B, Leithner A, Athanasou N, Daugaard S, Hogendoorn PC, Bovée JV. (2013): Screening for Potential Targets for Therapy in Mesenchymal, Clear Cell, and Dedifferentiated Chondrosarcoma Reveals Bcl-2 Family Members and TGFβ as Potential Targets
Am J Pathol. 2013 Apr;182(4):1347-56. (doi: 10.1016/j.ajpath.2012.12.036.)

Verbeke SL, Bertoni F, Bacchini P, Oosting J, Sciot R, Krenács T, Bovée JV. (2013). Active TGF-b signaling and decreased expression of PTEN separates angiosarcoma of bone from its soft tissue counterpart
Modern Pathology 2013 Apr 19. (doi: 10.1038/modpathol.2013.56.)

Chaisuparat, R., Yodsanga, S., Montaner, S., and Jham, B.C. (2013). Activation of the Akt/mTOR pathway in dentigerous cysts, odontogenic keratocysts, and ameloblastomas.
Oral Surg. Oral Med. Oral Pathol. Oral Radiol. 116, 336–342.

Giorgio, E.D., Clocchiatti, A., Piccinin, S., Sgorbissa, A., Viviani, G., Peruzzo, P., Romeo, S., Rossi, S., Tos, A.P.D., Maestro, R., et al. (2013). MEF2 Is a Converging Hub for Histone Deacetylase 4 and Phosphatidylinositol 3-Kinase/Akt-Induced Transformation.
Mol. Cell. Biol. 33, 4473–4491.

Goos, J. a. C.M., Coupe, V.M.H., Diosdado, B., Delis-Van Diemen, P.M., Karga, C., Beliën, J. a. M., Carvalho, B., van den Tol, M.P., Verheul, H.M.W., Geldof, A.A., et al. (2013). Aurora kinase A (AURKA) expression in colorectal cancer liver metastasis is associated with poor prognosis.
Br. J. Cancer 109, 2445–2452.

De Graaff, M.A., Cleton-Jansen, A.-M., Szuhai, K., and Bovée, J.V.M.G. (2013). Mediator complex subunit 12 exon 2 mutation analysis in different subtypes of smooth muscle tumors confirms genetic heterogeneity.
Hum. Pathol. 44, 1597–1604.

Ohtomo, R., Mori, T., Shibata, S., Tsuta, K., Maeshima, A.M., Akazawa, C., Watabe, Y., Honda, K., Yamada, T., Yoshimoto, S., et al. (2013). SOX10 is a novel marker of acinus and intercalated duct differentiation in salivary gland tumors: a clue to the histogenesis for tumor diagnosis.
Mod. Pathol. 26, 1041–1050.

Zlobec, I., Koelzer, V.H., Dawson, H., Perren, A., and Lugli, A. (2013). Next-generation tissue microarray (ngTMA) increases the quality of biomarker studies: an example using CD3, CD8, and CD45RO in the tumor microenvironment of six different solid tumor types.
J. Transl. Med. 11, 104.

Laurent, C., Guérin, M., Frenois, F-X.,Thuries, V., Jalabert, L., Brousset, P., Valmary-Degano, S.. (2013). Whole-slide imaging is a robust alternative to traditional fluorescent microscopy for fluorescence in situ hybridization imaging using break-apart DNA probes
Human Pathology Volume 44, Issue 8, Pages 1544–1555.

Kiszler, G., Krecsák, L., Csizmadia, A., Micsik, T., Szabó, D., Jónás, V., Prémusz, V., Krenács, T., Molnár, B. (2013). Semi-automatic FISH quantification on digital slides. 
Diagn Pathol. 2013; 8(Suppl 1): S21..



Varga VS, Molnár B, Virág T. (2012): Automated high throughput whole slide imaging using area sensors, flash light illumination and solid state light engine.
Stud Health Technol Inform. 2012;179:187-202.)

Fónyad L, Krenács T, Nagy P, Zalatnai A, Csomor J, Sápi Z, Pápay J, Schönléber J, Diczházi Cs, Molnár B. (2012): Validation of diagnostic accuracy using digital slides in routine histopathology.
Diagnostic Pathology 2012, 7:35 (doi:10.1186/1746-1596-7-35)

Krenacs T, Kiszner G, Stelkovics E, Balla P, Teleki I, Nemeth I, Varga E, Korom I, Barbai T, Plotar V, Timar J, Raso E. (2012): Collagen XVII is expressed in malignant but not in benign melanocytic tumors and it can mediate antibody induced melanoma apoptosis.
Histochem Cell Biol. 2012 Oct;138(4):653-67. (doi: 10.1007/s00418-012-0981-9.)

Rajnai H, Bödör Cs, Balogh Zs, Gagyi É, Csomor J, Krenács T, Tóth E, Matolcsy A. (2012): Impact of the reactive microenvironment on the bone marrow involvement of follicular lymphoma.
Histophatology (doi: 10.1111/j.1365-2559.2012.04187.x)

Rossing HH, Talman MLM, Lænkholm AV, Wielenga VT. (2012): Implementation of TMA and digitalization in routine diagnostics of breast pathology.
Acta Pathologica Microbiologica et Immunologica Scandinavica 2012, 120:4 (DOI: 10.1111/j.1600-0463.2011.02871.x)

Bignotti, E., Zanotti, L., Calza, S., Falchetti, M., Lonardi, S., Ravaggi, A., Romani, C., Todeschini, P., Bandiera, E., Tassi, R.A., et al. (2012). Trop-2 protein overexpression is an independent marker for predicting disease recurrence in endometrioid endometrial carcinoma.
BMC Clin. Pathol. 12, 22.

Laurinavicius, A., Laurinaviciene, A., Ostapenko, V., Dasevicius, D., Jarmalaite, S., and Lazutka, J. (2012). Immunohistochemistry profiles of breast ductal carcinoma: factor analysis of digital image analysis data.
Diagn. Pathol. 7, 27.



Baka Z, Barta P, Losonczy G, Krenács T, Pápay J, Szarka E, Sármay G, Babos F, Magyar A, Géher P, Buzás EI, Nagy G. (2011): Specific expression of PAD4 and citrullinated proteins in lung cancer is not associated with anti-CCP antibody production.
Int Immunol. 2011 Jun;23(6):405-14. (doi: 10.1093/intimm/dxr026)

Balla P, Moskovszky L, Sapi Z, Forsyth R, Knowles H, Athanasou NA, Szendroi M, Kopper L, Rajnai H, Pinter F, Petak I, Benassi MS, Picci P, Conti A, Krenacs T. (2011): Epidermal growth factor receptor signalling contributes to osteoblastic stromal cell proliferation, osteoclastogenesis and disease progression in giant cell tumour of bone.
Histopathology. 2011 Sep;59(3):376-89. (doi: 10.1111/j.1365-2559.2011.03948.x.)

Egervári G, Márk A, Hajdu M, Barna G, Sápi Z, Krenács T, Kopper L, Sebestyén A. (2011): Mitotic lymphoma cells are characterized by high expression of phosphorylated ribosomal S6 protein.
Histochem Cell Biol. 2011 Apr;135(4):409-17. doi: 10.1007/s00418-011-0803-5

Gong P, Roseman J, Fernandez CG, Vetrivel KS, Bindokas VP, Zitzow LA, Kar S, Parent AT, Thinakaran G. (2011): Transgenic neuronal overexpression reveals that stringently regulated p23 expression is critical for coordinated movement in mice.
Molecular Neurodegeneration 2011, 6:87 (doi:10.1186/1750-1326-6-87)

Huijts PEA, Dongen v. M, Goeij de MCM, Moolenbroek v. AJ, Blanken F, Vreeswijk MPG, Kruijf de EM, Mesker WE, Zwet v. EW, Tollenaar RAEM, Smit VTHBM, Asperen v. CJ, Devilee P. (2011): Allele-specific regulation of FGFR2 expression is cell type-dependent and may increase breast cancer risk through a paracrine stimulus involving FGF10.
Breast Cancer Research 2011, 13:R72 (doi:10.1186/bcr2917)

Huss S, Fronhoffs F, Büttner R, Heukamp LC. (2011): Web-based database for the management of tissue specimens in a transregional histological research facility.
Diagnostic Pathology 2011, 6:17 (doi:10.1186/1746-1596-6-17)

Krecsák L, Micsik T, Kiszler G, Krenács T, Szabó D, Jónás V, Császár G, Czuni L, Gurzó P, Ficsor L, Molnár B. (2011): Technical note on the validation of a semi-automated image analysis software application for estrogen and progesterone receptor detection in breast cancer.
Diagnostic Pathology 2011, 6:6 (doi: 10.1186/1746-1596-6-6)

Kayser K, Borkenfeld S, Goldmann T, Kayser G. (2011): Virtual slides in peer reviewed, open access medical publication.
Diagnostic Pathology 2011, 6:124 (doi: 10.1186/1746-1596-6-124)

Lee RE, McClintock DS, Laver NM, Yagi Y. (2011): Evaluation and optimization for liquid-based preparation cytology in whole slide imaging.
Journal of Pathology Informatics 2011, 2:46 (doi: 10.4103/2153-3539.86285)

Maggiani F, Forsyth R, Hogendoorn PC, Krenacs T, Athanasou NA. (2011): The immunophenotype of osteoclasts and macrophage polykaryons.
J Clin Pathol. 2011 Aug;64(8):701-5. (doi: 10.1136/jcp.2011.090852.)

Meijer D, Gelderblom H, Karperien M, Cleton-Jansen AM, Hogendoorn PCW, Bovée JVMG. (2011): Expression of aromatase and estrogen receptor alpha in chondrosarcoma, but no beneficial effect of inhibiting estrogen signaling both in vitro and in vivo.
Clinical Sarcoma Research 2011, 1:5 (doi:10.1186/2045-3329-1-5)

Pansuriya TC, Oosting J, Krenács T, Taminiau AHM, Verdegaal SHM, Sangiorgi L, Sciot R, Hogendoorn PCW, Szuhai K, Bovée JVMG. (2011): Genome-wide analysis of Ollier disease: Is it all in the genes?
Orphanet Journal of Rare Diseases 2011, 6:2 (doi:10.1186/1750-1172-6-2)

Szasz AM, Nemeth Zs, Gyorffy B, Micsinai M, Krenacs T, Baranyai Zs, Harsanyi L, Kiss A, Schaff Zs, Tokes A, Kulka J. (2011): Identification of a claudin-4 and E-cadherin score to predict prognosis in breast cancer.
Cancer Science V102, (12):2248-2254 (doi: 10.1111/j.1349-7006.2011.02085.x)

Szasz AM, Tokes AM, Micsinai M, Krenacs T, Jakab C, Lukacs L, Nemeth Z, Baranyai Z, Dede K, Madaras L, Kulka J. (2011): Prognostic significance of claudin expression changes in breast cancer with regional lymph node metastasis.
Clin Exp Metastasis. 2011 Jan;28(1):55-63. (doi: 10.1007/s10585-010-9357-5.)

Szymas J, Lundin M. (2011): Five years of experience teaching pathology to dental students using the WebMicroscope.
Diagnostic Pathology 2011, 6(Suppl 1):S13 (doi: 10.1186/1746-1596-6-S1-S13)

Tamás L, Szentkúti G, Erős M, Dános K, Brauswetter D, Szende B, Zsákovics I, Krenács T. (2011): Differential Biomarker Expression in Head and Neck Cancer Correlates with Anatomical Localization.
Pathology & Oncology Research V17 (3):721-727 (doi: 10.1007/s12253-011-9376-9)

Than NG, Romero R, Meiri H, Erez O, Xu Y, et al. (2011): PP13, Maternal ABO Blood Groups and the Risk Assessment of Pregnancy Complications.
PLoS ONE 6(7):e21564. (doi:10.1371/journal.pone.0021564)

Valcz G, Krenács T, Sipos F, Patai ÁV, Wichmann B, Leiszter K,Tóth K, Balogh Zs, Csizmadia A, Hagymási K, Masszi T, Molnár B, Tulassay Zs. (2011): Lymphoid aggregates may contribute to the migration and epithelial commitment of bone marrow-derived cells in colonic mucosa.
Journal of Clinical Pathology 2011, 64:771-775 (doi:10.1136/jclinpath-2011-200022)



Alberghini M, Kliskey K, Krenacs T, Picci P, Kindblom L, Forsyth R, Athanasou NA. (2010): Morphological and immunophenotypic features of primary and metastatic giant cell tumour of bone.
Virchows Arch. 2010 Jan;456(1):97-103. (doi: 10.1007/s00428-009-0863-2)

Fónyad L, Gerely L, Cserneky M, Molnár B, Matolcsy A. (2010): Shifting gears higher – digital slides in graduate education - 4 years experience at Semmelweis University.
Diagnostic Pathology 2010, 5:73 (doi: 10.1186/1746-1596-5-73)

Krenacs T, Ficsor L, Varga SV, Angeli V, Molnar B. (2010): Digital microscopy for boosting database integration and analysis in TMA studies.
Methods Mol Biol. 2010;664:163-75. (doi: 10.1007/978-1-60761-806-5_16.)

Krenacs T, Zsakovics I, Micsik T, Fonyad L, Varga V.S, Ficsor L, Kiszler G and Molnar B. (2010): Digital microscopy – the upcoming revolution in histopathology teaching, diagnostics, research and quality assurance
MICROSCOPY Book Series - Number 4 (p.965 - 977)

Francz, M., Egervari, K., Kardos, L., Toth, J., Nemes, Z., Szanto, J., and Szollosi, Z. (2010). Comparison of Pathvysion and Poseidon HER2 FISH assays in measuring HER2 amplification in breast cancer: a validation study.
J. Clin. Pathol. 63, 341–346.



Badhwara A, Chakravartya MM, Zehntnera SP, Hamelb E, Bedella BJ (2009): Automated quantification of vascular and parenchymal beta-amyloid burdens in a transgenic mouse model of Alzheimer's disease.
Journal of the Neurological Sciences 283: 253. (doi:10.1016/j.jns.2009.02.058)

Rocha RM, Miller K, Soares F, Schenka N, Vassallo J, Gobbi H (2009): Biotin-free systems provide stronger immunohistochemical signal in oestrogen receptor evaluation of breast cancer.
Journal of Clinical Pathology, 62: 699–704. (doi:10.1136/jcp.2009.065326)

Krenacs T, Zsakovics I, Diczhazi C, Ficsor L, Varga VS, Molnar B. (2009): The potential of digital microscopy in breast pathology.
Pathol Oncol Res. 2009 Mar;15(1):55-8. (doi: 10.1007/s12253-008-9087-z.)

Varga VS, Ficsor L, Kamarás V, Jónás V, Virág T, Tulassay Zs, Molnár B. (2009): Automated multichannel fluorescent whole slide imaging and its application for cytometry.
Cytometry Part A 75A (12):1020-1030 (doi: 10.1002/cyto.a.20791)



ConwayC, Dobson L, O’Grady A, Kay E, Costello S, O’Shea D. (2008): Virtual microscopy as an enabler of automated/quantitative assessment of protein expression in TMAs.
Histochemistry and Cell Biology 130:447–463. (DOI 10.1007/s00418-008-0480-1)

DeAgustín D, Sanmartín J, Varela-Centelles P, Vidal S, Seoane J. (2008): Technological Bases for Teledermatopathology: State of the Art.
Seminars in Cutaneous Medicine and Surgery 27: 25–31. (doi:10.1016/j.sder.2008.01.007)

Ficsor L, Varga VS, Tagscherer A, Tulassay Z, Molnar B. (2008): Automated classification of inflammation in colon histological sections.
Cytometry Part A 73A(3):230–237. (DOI: 10.1002/cyto.a.20527)

Galamb O, Sipos F, Solymosi N, Spisák S, Krenács T, Tóth K, Tulassay Z, Molnár B. (2008): Diagnostic mRNA expression patterns of inflamed, benign and malignant colorectal biopsy specimen and their correlation with peripheral blood results.
Cancer Epidemiology Biomarkers & Prevention 17(10): 2835–2845. (doi:10.1158/1055-9965.EPI-08-0231)

Geurts JJG, Barkhof F. (2008): Grey matter pathology in multiple sclerosis.
The Lancet Neurology 7: 841–851.

Kalló I, Jekkel Cs, Hrabovszky E, Jurányi Zs, Vida B, Járási A, Wilheim T, Harsing LG Jr., Liposits Zs. (2008): Immunohistochemical and in situ hybridization studies on glycine transporter 1 after transient ischemia in the rat forebrain.
Neurochemistry International 52: 799–808. (doi:10.1016/j.neuint.2007.09.011)

Nedjic J, Aichinger M, Emmerich J, Mizushima N, Klein L. (2008): Autophagy in thymic epithelium shapes the T-cell repertoire and is essential for tolerance.
Nature 455: 396–400. (doi:10.1038/nature07208)

Seeley EH, Stacey R. Oppenheimer SR, Mi D, Chaurand P, Caprioli RM. (2008): Enhancement of Protein Sensitivity for MALDI Imaging Mass Spectrometry After Chemical Treatment of Tissue Sections.
Journal of the American Society for Mass Spectrometry 19: 1069–1077. (doi:10.1016/j.jasms.2008.03.016)

Stelkovics E, Korom I, Marczinovits I, Molnar J, Rasky K, Raso E, Ficsor L, Molnar B, Kopper L, Krenacs T. (2008): Collagen XVII/BP180 Protein Expression in Squamous Cell Carcinoma of the Skin Detected With Novel Monoclonal Antibodies in Archived Tissues Using Tissue Microarrays and Digital Microscopy
Appl Immunohistochem Mol Morphol. 2008 Oct;16(5):433-41. (doi: 10.1097/PAI.0b013e318162f8aa)

Than NG, Abdul Rahman O, Magenheim R, Nagy B, Fule T, Hargitai B, Sammar M, Hupuczi P, Tarca AL, Szabo G, Kovalszky I, Meiri H, Sziller I, Rigo J Jr, Romero R, Papp Z. (2008): Placental protein 13 (galectin-13) has decreased placental expression but increased shedding and maternal serum concentrations in patients presenting with preterm pre-eclampsia and HELLP syndrome.
Virchows Archiv 453:387–400. (DOI 10.1007/s00428-008-0658-x)

Yagi Y, Gilbertson JR. (2008): A relationship between slide quality and image quality in whole slide imaging (WSI).
Diagnostic Pathology 3(Suppl 1): S12. (doi:10.1186/1746-1596-3-S1-S12)

Wittmann G, Deli L, Kalló I, Hrabovszky E, Watanabe M, Liposits ZS, Fekete Cs. (2007): Distribution of Type 1 Cannabinoid Receptor (CB1)-Immunoreactive Axons in the Mouse Hypothalamus.
The Journal of Comparative Neurology 503: 270–279. (DOI 10.1002/cne.21383)



Chakravarty MM, Bedell BJ, Zehntner SP, Hemmings K, Hamel E, Evans AC, Collins DL. (2007): P-105. Three dimensional reconstruction of histological sections and correlations with MRI from transgenic models of Alzheimer's disease.
Alzheimer's and Dementia 3(3 supplement): S132.

Cserni G, Kálmán E, Kulka J, Orosz Z, Udvarhelyi N, Krenács T. (2007): Quality control of HER2 immunohistochemitry  – Results from a Hungarian study.
Hungarian Oncology 51:23–29, 2007

Faverly, D. (2007): PP1-23 Teleconsultation of breast pathology data: the Belgian-Luxemburg trial.
Virchows Archiv 451(2): 201.

Gombás P, Illyés Gy. (2007): OP2-4 Is digital slide microscopy limited to specified morphological applications?
Virchows Archiv (Free Papers (Oral Presentations) 451(2 Suppl.1): 117. (10.1007/s00428-007-0489-1)

Hentschel F, Rudolph B, Zhang Z, Schlüns K, Saeger K, Stehr A, Hufnagl P, Schrader T. (2007): 175. Virtual Microscopy in Nephrology – an evaluation study for diagostic accuracy and image quality.
(Posters: Urologic Pathology (2)). Pathology – Research and Practice 203: 316. (doi:10.1016/j.prp.2007.03.004)

Krenacs T, Stelkovics E, Raso E, Korom I, Marczinovits I, Kopper L, Timar J. (2007): OP18-2 Over-expression of the hemidesmosomal adhesion protein collagen XVII in malignant melanoma.
Virchows Archiv (Free Papers (Oral Presentations) 451(2 Suppl.1): 159. (10.1007/s00428-007-0489-1)

Mager A-K, Liese M, Saeger K, Schlüns K, Hufnagl P, Dietel M, Schlake W, Schrader T. (2007): 155. Virtual Microscopy & T.Konsult Pathologie – The Telepathology Consultation Service of the Professional Association of German Pathologists for the screening program of breast carcinoma.
(Posters: Breast Pathology (2)). Pathology – Research and Practice 203: 308. (doi:10.1016/j.prp.2007.03.004)

Moskovszky L, Szendroi M, Sapi Z, Kopper L, Angeli V, Molnar B, Krenacs T. (2007): OP14-9 EGFR signaling in giant cell tumor of bone (GCTB): An immunomorphological tissue microarray (TMA) study using digital slides and database management.
Virchows Archiv (Free Papers (Oral Presentations) 451(2 Suppl.1): 152. (10.1007/s00428-007-0489-1)

Papay J, Krenacs T, Moldvay J, Stelkovics E, Furak J, Molnar B, Kopper L. (2007): Immunophenotypic profiling of nonsmall cell lung cancer progression using the tissue microarray approach.
Appl Immunohistochem Mol Morphol. 2007 Mar;15(1):19-30.

Persohn E, Seewald W, Bauer J, Schreiber J. (2007): Cell proliferation measurement in cecum and colon of rats using scanned images and fully automated image analysis: Validation of method.
Experimental and Toxicologic Pathology 58: 411–418. (doi:10.1016/j.etp.2007.01.005)



Bourde-Vacher K, Poignant S (2006): Analyses d'images.
ITBM-RBM News 27(1): 60–66.

Ficsór L, Molnár B, Tulassay Zs. (2006): Experiences in automatic classification of colon and gastric digital slides.
(Poster Abstracts of Third European Congress of Toxicologic Pathology; held in Copenhagen, 29 September–1 October 2005). Experimental and Toxicologic Pathology 57: 395–396. (doi:10.1016/j.etp.2006.04.002)

Ficsor L, Varga V, Berczi L, Miheller P, Tagscherer A, Wu MLC, Tulassay Z, Molnar B. (2006): Automated virtual microscopy of gastric biopses.
Cytometry Part B: Clinical Cytometry 70(6): 423–431. (DOI 10.1002/cyto.b)

Horváth I, Krajcsovicz Z, Selényi Gy. (2006): Working experience with digital slide and virtual microscopy-based routine toxicopathology evaluation.
(Poster Abstracts of Third European Congress of Toxicologic Pathology; held in Copenhagen, 29 September–1 October 2005). Experimental and Toxicologic Pathology 57: 395. (doi:10.1016/j.etp.2006.04.002)

Rojo MG, García GB, Mateos CP, García JG, Vicente MC. (2006): Critical Comparison of 31 Commercially Available Digital Slide Systems in Pathology.
International Journal of Surgical Pathology 14: 285–305. (DOI: 10.1177/1066896906292274)

Schrader T, Niepage S, Leuthold T, Saeger K, Schluns K, Hufnagl P, Kayser K, Dietel M. (2006): The diagnostic path, a useful visualisation tool in virtual microscopy.
Diagnostic Pathology 1: 40. (doi:10.1186/1746-1596-1-40)

Varga VS, Kamarás V, Csendes G, Virág T, Sipos F, Tulassay Zs, Molnár B. (2006): The advances in scanning fluorescent microscopy (automated slide handling, metal-halide illumination, software features) means significant advantage for routine applications.
(Poster Abstracts of Third European Congress of Toxicologic Pathology; held in Copenhagen, 29 September–1 October 2005). Experimental and Toxicologic Pathology 57: 395. (doi:10.1016/j.etp.2006.04.002)



Rojo MG, García GB, García JG, Vicente MC (2005): Preparaciones digitales en los servicios de Anatomía Patológica (I). Aspectos básicos de imagen digital.
Revista Española de Patología 38 (2): 69–77.

Rojo MG, García GB, Mateos CP, García JG. (2005): Preparaciones digitales en los servicios de Anatomía Patológica (II). Análisis de soluciones existentes.
Revista Española de Patología 38(4): 207–220.

Wu ML, Varga VS, Kamaras V, Ficsor L, Tagscherer A, Tulassay Z, Molnar B. (2005): Three-Dimensional Virtual Microscopy of Colorectal Biopsies.
Archives of Pathology & Laboratory Medicine 129: 507-510.



Molnar B, Varga VS, Csendes G, Virag T, Tulassay Zs. (2004): 98435. Advances in scanning fluorescent microscopy, (automated slide handling, metal-halide illumination, software features) means significant benefit for routine tissue cytometry.
(ISAC Congress XXII: Oral Presentation Abstracts) Cytometry Part A 59A(1): 40. (doi 10.1002/cyto.a.20044.abs)

Varga VS, Bocsi J, Sipos F, Csendes G, Tulassay Zs, Molnár B. (2004): Scanning fluorescent microscopy is an alternative for quantitative fluorescent cell analysis.
Cytometry Part A 60A (1):53-62 (doi: 10.1002/cyto.a.20027)